QTL Accession ID | AQFU015 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | AMYCN | ||||
Trait Name | amylose content | ||||
Published Symbol | amy3 | ||||
Trait Synonym(s) |
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Trait Category | Quality | ||||
Chromosome | 3 | ||||
Comments | The allelic source of this QTL is "Caiapo". |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 1,945,837-13,221,665 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | LSU Caiapo/IRGC103544 QTL 2004 | BNL6.32 | 3 | 54.2-64.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFU015 | 3 | 54.2 | 64.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM7 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM251 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM81 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM338 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000196) | Aluko-G et al., 2004 (IAGP) |
Plant Structure | (PO:0009010) | Aluko-G et al., 2004 (SM) |
Plant Growth and Development Stage | (PO:0007038 ) | Aluko-G et al., 2004 (SM) |
Growth Stage | (GRO:0007045) | Aluko-G et al., 2004 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Aluko-G et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 1,945,837 | 13,221,665 | ~160K SNPs x 20 accessions (McNally 2... | 5,670 | Search for SNPs |
chr3 | 1,945,837 | 13,221,665 | '1536 chip' - 1311 SNPs x 395 rice ac... | 41 | Search for SNPs |
chr3 | 1,945,837 | 13,221,665 | Huang X, et al, Nat Genetics 2010 Nov... | 19,910 | Search for SNPs |
chr3 | 1,945,837 | 13,221,665 | RiceDiversity 44K SNP assay, 34 trait... | 19,910 | Search for SNPs |
chr3 | 1,945,837 | 13,221,665 | RiceDiversity 44K SNP assay, 34 trait... | 1,318 | Search for SNPs |