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Oryza sativa QTL "AQFT041" (penetrated root thickness)
| QTL Accession ID | AQFT041 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | PENRTTH |
| Trait Name | penetrated root thickness |
| Published Symbol | prt9.1 |
| Trait Synonym(s) |
penetrated root thickness prt |
| Trait Category | Abiotic stress |
| Chromosome | 9 |
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 9 | 1,211,963-3,586,206 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | MU CT9993/IR6226 QTL 2004 | BNL6.32 | 9 | 2.8-2.8 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQFT041 | 9 | 2.8 | 2.8 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C711 | RFLP | Oryza sativa | qtl_marker |
| To | C313 | RFLP | Oryza sativa | qtl_marker |
| To | C438 | RFLP | Oryza sativa | qtl_marker |
| To | RZ698 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000090) | Nguyen-T-T et al., 2004 (IAGP) |
| Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Nguyen-T-T et al., 2004 (SM) |
Database Cross-References (1)
SNPs (3,617)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr9 | 1,211,963 | 3,586,206 | ~160K SNPs x 20 accessions (McNally 2... | 532 | Search for SNPs |
| chr9 | 1,211,963 | 3,586,206 | '1536 chip' - 1311 SNPs x 395 rice ac... | 4 | Search for SNPs |
| chr9 | 1,211,963 | 3,586,206 | Huang X, et al, Nat Genetics 2010 Nov... | 1,460 | Search for SNPs |
| chr9 | 1,211,963 | 3,586,206 | RiceDiversity 44K SNP assay, 34 trait... | 1,460 | Search for SNPs |
| chr9 | 1,211,963 | 3,586,206 | RiceDiversity 44K SNP assay, 34 trait... | 161 | Search for SNPs |
