QTL Accession ID | AQFT024 | ||||||||
---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||
Trait Symbol | RTDWT | ||||||||
Trait Name | root dry weight | ||||||||
Published Symbol | trdw1.1 | ||||||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||||||
Chromosome | 1 | ||||||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 38,280,484-38,531,467 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | MU CT9993/IR6226 QTL 2004 | BNL6.32 | 1 | 235.9-235.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFT024 | 1 | 235.9 | 235.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG727 | RFLP | Oryza sativa | qtl_marker |
To | RG109 | RFLP | Oryza sativa | qtl_marker |
To | C813 | RFLP | Oryza sativa | qtl_marker |
To | CDO345 | RFLP | Avena sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000078) | Nguyen-T-T et al., 2004 (IAGP) |
Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Nguyen-T-T et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 38,280,484 | 38,531,467 | ~160K SNPs x 20 accessions (McNally 2... | 116 | Search for SNPs |
chr1 | 38,280,484 | 38,531,467 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr1 | 38,280,484 | 38,531,467 | Huang X, et al, Nat Genetics 2010 Nov... | 312 | Search for SNPs |
chr1 | 38,280,484 | 38,531,467 | RiceDiversity 44K SNP assay, 34 trait... | 312 | Search for SNPs |
chr1 | 38,280,484 | 38,531,467 | RiceDiversity 44K SNP assay, 34 trait... | 29 | Search for SNPs |