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Oryza sativa QTL "AQFT017" (basal root thickness)
| QTL Accession ID | AQFT017 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | BARTTH |
| Trait Name | basal root thickness |
| Published Symbol | brt12.1 |
| Trait Synonym(s) | BRT |
| Trait Category | Anatomy |
| Chromosome | 12 |
| Comments | A new drought-inducible cDNA clone, I23C1, was mapped inside this QTL region. This cDNA matched Rice mRNA for oryzain gamma (EC 3.4.22) in the GenBank. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 23,603,156-23,603,428 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | MU CT9993/IR6226 QTL 2004 | BNL6.32 | 12 | 68.2-71 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQFT017 | 12 | 68.2 | 71 |
Associated Markers (2)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | CDO344 | RFLP | Avena sativa | qtl_marker |
| To | RG413 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000094) | Nguyen-T-T et al., 2004 (IAGP) |
| Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Nguyen-T-T et al., 2004 (SM) |
Database Cross-References (1)
SNPs (1)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr12 | 23,603,156 | 23,603,428 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
| chr12 | 23,603,156 | 23,603,428 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr12 | 23,603,156 | 23,603,428 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
| chr12 | 23,603,156 | 23,603,428 | Huang X, et al, Nat Genetics 2010 Nov... | 0 | |
| chr12 | 23,603,156 | 23,603,428 | RiceDiversity 44K SNP assay, 34 trait... | 0 | |
| chr12 | 23,603,156 | 23,603,428 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
