QTL Accession ID | AQFT010 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | BARTTH |
Trait Name | basal root thickness |
Published Symbol | brt2.1 |
Trait Synonym(s) | BRT |
Trait Category | Anatomy |
Chromosome | 2 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 23,272,306-23,378,772 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | MU CT9993/IR6226 QTL 2004 | BNL6.32 | 2 | 241.3-247.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFT010 | 2 | 241.3 | 247.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | R1870 | RFLP | Oryza sativa | qtl_marker |
To | R3128 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000094) | Nguyen-T-T et al., 2004 (IAGP) |
Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Nguyen-T-T et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 23,272,306 | 23,378,772 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr2 | 23,272,306 | 23,378,772 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr2 | 23,272,306 | 23,378,772 | Huang X, et al, Nat Genetics 2010 Nov... | 319 | Search for SNPs |
chr2 | 23,272,306 | 23,378,772 | RiceDiversity 44K SNP assay, 34 trait... | 319 | Search for SNPs |
chr2 | 23,272,306 | 23,378,772 | RiceDiversity 44K SNP assay, 34 trait... | 0 |