QTL Accession ID | AQFT007 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | RTPNID |
Trait Name | root penetration index |
Published Symbol | rpi4.1 |
Trait Synonym(s) |
root penetration index rpi |
Trait Category | Abiotic stress |
Chromosome | 4 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 11,233,324-21,453,222 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | MU CT9993/IR6226 QTL 2004 | BNL6.32 | 4 | 27.4-28.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFT007 | 4 | 27.4 | 28.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ69 | RFLP | Oryza sativa | qtl_marker |
To | RZ565 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000471) | Nguyen-T-T et al., 2004 (IAGP) |
Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Nguyen-T-T et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 11,233,324 | 21,453,222 | ~160K SNPs x 20 accessions (McNally 2... | 3,365 | Search for SNPs |
chr4 | 11,233,324 | 21,453,222 | '1536 chip' - 1311 SNPs x 395 rice ac... | 34 | Search for SNPs |
chr4 | 11,233,324 | 21,453,222 | Huang X, et al, Nat Genetics 2010 Nov... | 27,211 | Search for SNPs |
chr4 | 11,233,324 | 21,453,222 | RiceDiversity 44K SNP assay, 34 trait... | 27,211 | Search for SNPs |
chr4 | 11,233,324 | 21,453,222 | RiceDiversity 44K SNP assay, 34 trait... | 775 | Search for SNPs |