QTL Accession ID | AQFT002 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | OSADJCAP | ||||
Trait Name | osmotic adjustment capacity | ||||
Published Symbol | oa2.1 | ||||
Trait Synonym(s) |
|
||||
Trait Category | Abiotic stress | ||||
Chromosome | 2 | ||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 25,865,334-28,354,640 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | MU CT9993/IR6226 QTL 2004 | BNL6.32 | 2 | 105.4-116.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFT002 | 2 | 105.4 | 116.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM263 | SSR | Oryza sativa Indica Group | qtl_marker |
To | R3393 | RFLP | Oryza sativa | qtl_marker |
To | R26 | RFLP | Oryza sativa | qtl_marker |
To | RZ58 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000507) | Nguyen-T-T et al., 2004 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Nguyen-T-T et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 25,865,334 | 28,354,640 | ~160K SNPs x 20 accessions (McNally 2... | 962 | Search for SNPs |
chr2 | 25,865,334 | 28,354,640 | '1536 chip' - 1311 SNPs x 395 rice ac... | 4 | Search for SNPs |
chr2 | 25,865,334 | 28,354,640 | Huang X, et al, Nat Genetics 2010 Nov... | 5,170 | Search for SNPs |
chr2 | 25,865,334 | 28,354,640 | RiceDiversity 44K SNP assay, 34 trait... | 5,170 | Search for SNPs |
chr2 | 25,865,334 | 28,354,640 | RiceDiversity 44K SNP assay, 34 trait... | 240 | Search for SNPs |