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Oryza sativa QTL "AQFT001" (osmotic adjustment capacity)
| QTL Accession ID | AQFT001 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | OSADJCAP | ||||
| Trait Name | osmotic adjustment capacity | ||||
| Published Symbol | oa1.1 | ||||
| Trait Synonym(s) |
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| Trait Category | Abiotic stress | ||||
| Chromosome | 1 | ||||
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 5,094,276-5,095,699 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | MU CT9993/IR6226 QTL 2004 | BNL6.32 | 1 | 32.8-36.7 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQFT001 | 1 | 32.8 | 36.7 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG140 | RFLP | Oryza sativa | qtl_marker |
| To | RG147 | RFLP | Oryza sativa | qtl_marker |
| To | RG532 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000507) | Nguyen-T-T et al., 2004 (IAGP) |
| Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Nguyen-T-T et al., 2004 (SM) |
Database Cross-References (1)
SNPs (10)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 5,094,276 | 5,095,699 | ~160K SNPs x 20 accessions (McNally 2... | 6 | Search for SNPs |
| chr1 | 5,094,276 | 5,095,699 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr1 | 5,094,276 | 5,095,699 | Huang X, et al, Nat Genetics 2010 Nov... | 2 | Search for SNPs |
| chr1 | 5,094,276 | 5,095,699 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
| chr1 | 5,094,276 | 5,095,699 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
