QTL Accession ID | AQFR047 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SDLVIG |
Trait Name | seedling vigor |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Vigor |
Chromosome | 9 |
Comments | The shoot length of seedling at fifteen days after incubation was measured to evaluate seedling vigor and used for QTL analysis. This locus was found to have significant interaction with another locus, AQFR46. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 9 | 18,810,067-18,810,331 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 9 | 137.1-142.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFR047 | 9 | 137.1 | 142.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM242 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM278 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM257 | SSR | Oryza sativa Indica Group | qtl_marker |
To | OSR28 | SSR | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000280) | Huang-Z et al., 2004 (IAGP) |
Plant Structure | (PO:0009003) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007131) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007043) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Huang-Z et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr9 | 18,810,067 | 18,810,331 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr9 | 18,810,067 | 18,810,331 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr9 | 18,810,067 | 18,810,331 | Huang X, et al, Nat Genetics 2010 Nov... | 2 | Search for SNPs |
chr9 | 18,810,067 | 18,810,331 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
chr9 | 18,810,067 | 18,810,331 | RiceDiversity 44K SNP assay, 34 trait... | 0 |