QTL Accession ID | AQFR007 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SDLVIG |
Trait Name | seedling vigor |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Vigor |
Chromosome | 4 |
Comments | The germination rate at eleven days after incubation was measured to evaluate seedling vigor and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 11,233,324-20,173,040 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 4 | 42.1-53.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFR007 | 4 | 42.1 | 53.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG449 | RFLP | Oryza sativa | qtl_marker |
To | C949 | RFLP | Oryza sativa | qtl_marker |
To | RZ69 | RFLP | Oryza sativa | qtl_marker |
To | G271 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000280) | Huang-Z et al., 2004 (IAGP) |
Plant Structure | (PO:0009003) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007131) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007043) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Huang-Z et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 11,233,324 | 20,173,040 | ~160K SNPs x 20 accessions (McNally 2... | 2,470 | Search for SNPs |
chr4 | 11,233,324 | 20,173,040 | '1536 chip' - 1311 SNPs x 395 rice ac... | 27 | Search for SNPs |
chr4 | 11,233,324 | 20,173,040 | Huang X, et al, Nat Genetics 2010 Nov... | 24,665 | Search for SNPs |
chr4 | 11,233,324 | 20,173,040 | RiceDiversity 44K SNP assay, 34 trait... | 24,665 | Search for SNPs |
chr4 | 11,233,324 | 20,173,040 | RiceDiversity 44K SNP assay, 34 trait... | 603 | Search for SNPs |