![[Home Page]](/images/icons/gramene_logo180new.jpg "[Home Page]"){kind=icon}
QTL Home |
Simple Search |
Power Search |
Help |
Tutorial |
FAQ
Oryza sativa QTL "AQFQ006" (pre-flowering floret abortion)
| QTL Accession ID | AQFQ006 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | PREFLFLRABR |
| Trait Name | pre-flowering floret abortion |
| Published Symbol | |
| Trait Synonym(s) | frequency of pre-flowering floret abortion |
| Trait Category | Sterility or fertility |
| Chromosome | 1 |
| Comments | Frequency of pre-flowering floret abortion was measured to evaluate pre-flowering floret abortion and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 28,612,147-32,099,860 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JUT Akihi/IRAT109 QTL 2004 | BNL6.32 | 1 | 94.5-102.9 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQFQ006 | 1 | 94.5 | 102.9 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM1297 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM297 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM306 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM3447 | SSR | Oryza sativa Japonica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000671) | Yamagishi-J et al., 2004 (IAGP) |
| Plant Structure | (PO:0009046) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007016) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007151) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Yamagishi-J et al., 2004 (SM) |
Database Cross-References (1)
SNPs (13,875)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 28,612,147 | 32,099,860 | ~160K SNPs x 20 accessions (McNally 2... | 2,730 | Search for SNPs |
| chr1 | 28,612,147 | 32,099,860 | '1536 chip' - 1311 SNPs x 395 rice ac... | 9 | Search for SNPs |
| chr1 | 28,612,147 | 32,099,860 | Huang X, et al, Nat Genetics 2010 Nov... | 5,337 | Search for SNPs |
| chr1 | 28,612,147 | 32,099,860 | RiceDiversity 44K SNP assay, 34 trait... | 5,337 | Search for SNPs |
| chr1 | 28,612,147 | 32,099,860 | RiceDiversity 44K SNP assay, 34 trait... | 462 | Search for SNPs |
