![[Home Page]](/images/icons/gramene_logo180new.jpg "[Home Page]"){kind=icon}
QTL Home |
Simple Search |
Power Search |
Help |
Tutorial |
FAQ
Oryza sativa QTL "AQFQ002" (primary branch)
| QTL Accession ID | AQFQ002 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | PBRNB | ||||||
| Trait Name | primary branch | ||||||
| Published Symbol | |||||||
| Trait Synonym(s) |
|
||||||
| Trait Category | Anatomy | ||||||
| Chromosome | 2 | ||||||
| Comments | Number of primary branches per panicle was measured to evaluate primary branch number and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 29,914,442-32,994,790 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JUT Akihi/IRAT109 QTL 2004 | BNL6.32 | 2 | 116.5-129.3 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQFQ002 | 2 | 116.5 | 129.3 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM3421 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM7286 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM5470 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM213 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000547) | Yamagishi-J et al., 2004 (IAGP) |
| Plant Structure | (PO:0006321) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Yamagishi-J et al., 2004 (SM) |
Database Cross-References (1)
SNPs (14,375)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr2 | 29,914,442 | 32,994,790 | ~160K SNPs x 20 accessions (McNally 2... | 1,428 | Search for SNPs |
| chr2 | 29,914,442 | 32,994,790 | '1536 chip' - 1311 SNPs x 395 rice ac... | 6 | Search for SNPs |
| chr2 | 29,914,442 | 32,994,790 | Huang X, et al, Nat Genetics 2010 Nov... | 6,302 | Search for SNPs |
| chr2 | 29,914,442 | 32,994,790 | RiceDiversity 44K SNP assay, 34 trait... | 6,302 | Search for SNPs |
| chr2 | 29,914,442 | 32,994,790 | RiceDiversity 44K SNP assay, 34 trait... | 337 | Search for SNPs |
