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Oryza sativa QTL "AQFP024" (culm thickness)
| QTL Accession ID | AQFP024 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | CULMTH | ||||||
| Trait Name | culm thickness | ||||||
| Published Symbol | bct2a | ||||||
| Trait Synonym(s) |
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| Trait Category | Anatomy | ||||||
| Chromosome | 2 | ||||||
| Comments | This QTL was detected based on the combined results from both lowland and upland ecosystem conditions. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 27,078,652-28,354,640 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CAU IRAT109/YUEFU QTL 2004 | BNL6.32 | 2 | 24.7-34.9 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQFP024 | 2 | 24.7 | 34.9 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | R3393 | RFLP | Oryza sativa | qtl_marker |
| To | C747 | RFLP | Oryza sativa | qtl_marker |
| To | G21 | RFLP | Oryza sativa | qtl_marker |
| To | C1445 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000339) | Mu-P et al., 2004 (IAGP) |
| Plant Structure | (PO:0009047) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Mu-P et al., 2004 (SM) |
Database Cross-References (1)
SNPs (3,491)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr2 | 27,078,652 | 28,354,640 | ~160K SNPs x 20 accessions (McNally 2... | 434 | Search for SNPs |
| chr2 | 27,078,652 | 28,354,640 | '1536 chip' - 1311 SNPs x 395 rice ac... | 2 | Search for SNPs |
| chr2 | 27,078,652 | 28,354,640 | Huang X, et al, Nat Genetics 2010 Nov... | 1,474 | Search for SNPs |
| chr2 | 27,078,652 | 28,354,640 | RiceDiversity 44K SNP assay, 34 trait... | 1,474 | Search for SNPs |
| chr2 | 27,078,652 | 28,354,640 | RiceDiversity 44K SNP assay, 34 trait... | 107 | Search for SNPs |
