QTL Accession ID | AQFP018 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | CULMSTR |
Trait Name | culm strength |
Published Symbol | cs5 |
Trait Synonym(s) |
CS stem strength |
Trait Category | Quality |
Chromosome | 5 |
Comments | This QTL was detected under the upland ecosystem condition. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 7,762,249-27,977,104 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CAU IRAT109/YUEFU QTL 2004 | BNL6.32 | 5 | 73.2-77.8 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFP018 | 5 | 73.2 | 77.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | R521 | RFLP | Oryza sativa | qtl_marker |
To | R566 | RFLP | Oryza sativa | qtl_marker |
To | RM161 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | R2289 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000051) | Mu-P et al., 2004 (IAGP) |
Plant Structure | (PO:0009047) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Mu-P et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 7,762,249 | 27,977,104 | ~160K SNPs x 20 accessions (McNally 2... | 9,681 | Search for SNPs |
chr5 | 7,762,249 | 27,977,104 | '1536 chip' - 1311 SNPs x 395 rice ac... | 58 | Search for SNPs |
chr5 | 7,762,249 | 27,977,104 | Huang X, et al, Nat Genetics 2010 Nov... | 43,816 | Search for SNPs |
chr5 | 7,762,249 | 27,977,104 | RiceDiversity 44K SNP assay, 34 trait... | 43,816 | Search for SNPs |
chr5 | 7,762,249 | 27,977,104 | RiceDiversity 44K SNP assay, 34 trait... | 1,752 | Search for SNPs |