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Oryza sativa QTL "AQFP017" (culm strength)
| QTL Accession ID | AQFP017 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | CULMSTR |
| Trait Name | culm strength |
| Published Symbol | cs10 |
| Trait Synonym(s) |
CS stem strength |
| Trait Category | Quality |
| Chromosome | 10 |
| Comments | This QTL was detected under the upland ecosystem condition. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 5,352,766-9,747,605 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CAU IRAT109/YUEFU QTL 2004 | BNL6.32 | 10a | 18.5-28.1 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQFP017 | 10 | 18.5 | 28.1 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM311 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM216 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM184 | SSR | Oryza sativa Japonica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000051) | Mu-P et al., 2004 (IAGP) |
| Plant Structure | (PO:0009047) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Mu-P et al., 2004 (SM) |
Database Cross-References (1)
SNPs (18,699)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr10 | 5,352,766 | 9,747,605 | ~160K SNPs x 20 accessions (McNally 2... | 1,051 | Search for SNPs |
| chr10 | 5,352,766 | 9,747,605 | '1536 chip' - 1311 SNPs x 395 rice ac... | 14 | Search for SNPs |
| chr10 | 5,352,766 | 9,747,605 | Huang X, et al, Nat Genetics 2010 Nov... | 8,673 | Search for SNPs |
| chr10 | 5,352,766 | 9,747,605 | RiceDiversity 44K SNP assay, 34 trait... | 8,673 | Search for SNPs |
| chr10 | 5,352,766 | 9,747,605 | RiceDiversity 44K SNP assay, 34 trait... | 288 | Search for SNPs |
