QTL Accession ID | AQFP011 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | CULMLG |
Trait Name | culm length |
Published Symbol | cl5b |
Trait Synonym(s) |
CL cml |
Trait Category | Anatomy |
Chromosome | 5 |
Comments | This QTL was detected under the lowland ecosystem condition. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 3,306,310-7,065,749 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CAU IRAT109/YUEFU QTL 2004 | BNL6.32 | 5 | 118.7-130.8 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFP011 | 5 | 118.7 | 130.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C282 | RFLP | Oryza sativa | qtl_marker |
To | R1838 | RFLP | Oryza sativa | qtl_marker |
To | C1447 | RFLP | Oryza sativa | qtl_marker |
To | RM87 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000576) | Mu-P et al., 2004 (IAGP) |
Plant Structure | (PO:0009047) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Mu-P et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 3,306,310 | 7,065,749 | ~160K SNPs x 20 accessions (McNally 2... | 1,585 | Search for SNPs |
chr5 | 3,306,310 | 7,065,749 | '1536 chip' - 1311 SNPs x 395 rice ac... | 13 | Search for SNPs |
chr5 | 3,306,310 | 7,065,749 | Huang X, et al, Nat Genetics 2010 Nov... | 9,401 | Search for SNPs |
chr5 | 3,306,310 | 7,065,749 | RiceDiversity 44K SNP assay, 34 trait... | 9,401 | Search for SNPs |
chr5 | 3,306,310 | 7,065,749 | RiceDiversity 44K SNP assay, 34 trait... | 334 | Search for SNPs |