QTL Accession ID | AQFP007 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | CULMTH | ||||||
Trait Name | culm thickness | ||||||
Published Symbol | bct11c | ||||||
Trait Synonym(s) |
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Trait Category | Anatomy | ||||||
Chromosome | 11 | ||||||
Comments | This QTL was detected under the lowland ecosystem condition. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 6,686,166-26,210,946 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CAU IRAT109/YUEFU QTL 2004 | BNL6.32 | 11b | 98.8-102.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFP007 | 11 | 98.8 | 102.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | G181 | RFLP | Oryza sativa | qtl_marker |
To | G320 | RFLP | Oryza sativa | qtl_marker |
To | RM224 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000339) | Mu-P et al., 2004 (IAGP) |
Plant Structure | (PO:0009047) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Mu-P et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr11 | 6,686,166 | 26,210,946 | ~160K SNPs x 20 accessions (McNally 2... | 7,541 | Search for SNPs |
chr11 | 6,686,166 | 26,210,946 | '1536 chip' - 1311 SNPs x 395 rice ac... | 80 | Search for SNPs |
chr11 | 6,686,166 | 26,210,946 | Huang X, et al, Nat Genetics 2010 Nov... | 55,851 | Search for SNPs |
chr11 | 6,686,166 | 26,210,946 | RiceDiversity 44K SNP assay, 34 trait... | 55,851 | Search for SNPs |
chr11 | 6,686,166 | 26,210,946 | RiceDiversity 44K SNP assay, 34 trait... | 2,291 | Search for SNPs |