QTL Accession ID | AQFP005 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | CULMTH | ||||||
Trait Name | culm thickness | ||||||
Published Symbol | bct5 | ||||||
Trait Synonym(s) |
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Trait Category | Anatomy | ||||||
Chromosome | 5 | ||||||
Comments | This QTL was detected under the lowland ecosystem condition. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 27,976,107-27,977,104 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CAU IRAT109/YUEFU QTL 2004 | BNL6.32 | 5 | 47.7-73.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFP005 | 5 | 47.7 | 73.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM161 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | R521 | RFLP | Oryza sativa | qtl_marker |
To | RM267 | SSR | Oryza sativa Indica Group | qtl_marker |
To | R566 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000339) | Mu-P et al., 2004 (IAGP) |
Plant Structure | (PO:0009047) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Mu-P et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 27,976,107 | 27,977,104 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
chr5 | 27,976,107 | 27,977,104 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr5 | 27,976,107 | 27,977,104 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
chr5 | 27,976,107 | 27,977,104 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
chr5 | 27,976,107 | 27,977,104 | RiceDiversity 44K SNP assay, 34 trait... | 0 |