QTL Accession ID | AQFJ017 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||||||||
Trait Symbol | SPKNB | ||||||||||||||||
Trait Name | spikelet number | ||||||||||||||||
Published Symbol | |||||||||||||||||
Trait Synonym(s) |
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Trait Category | Yield | ||||||||||||||||
Chromosome | 1 | ||||||||||||||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 4,239,057-4,239,450 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zhe97/Wuy2 QTL 2004 | BNL6.32 | 1 | 0-16.8 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFJ017 | 1 | 0 | 16.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM1167 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM84 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM283 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000456) | Jiang-G-H et al., 2004 (IAGP) |
Plant Structure | (PO:0009051) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Jiang-G-H et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 4,239,057 | 4,239,450 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
chr1 | 4,239,057 | 4,239,450 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr1 | 4,239,057 | 4,239,450 | Huang X, et al, Nat Genetics 2010 Nov... | 0 | |
chr1 | 4,239,057 | 4,239,450 | RiceDiversity 44K SNP assay, 34 trait... | 0 | |
chr1 | 4,239,057 | 4,239,450 | RiceDiversity 44K SNP assay, 34 trait... | 0 |