QTL Accession ID | AQFF048 | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||||
Trait Symbol | PNNB | ||||||||||||
Trait Name | panicle number | ||||||||||||
Published Symbol | qpn8.1 | ||||||||||||
Trait Synonym(s) |
|
||||||||||||
Trait Category | Yield | ||||||||||||
Chromosome | 8 | ||||||||||||
Comments | This QTL was detected under the W0 treatment (control and well-watered condition; received 9.4 mm water per day). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 27,734,995-27,735,542 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | TNCGEB CT9993/IR6226 QTL 2004 | BNL6.32 | 8 | 72.6-111.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFF048 | 8 | 72.6 | 111.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ997 | RFLP | Oryza sativa | qtl_marker |
To | RG598 | RFLP | Oryza sativa | qtl_marker |
To | RM210 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000152) | Lanceras-J-C et al., 2004 (IAGP) |
Plant Structure | (PO:0009049) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Lanceras-J-C et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr8 | 27,734,995 | 27,735,542 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr8 | 27,734,995 | 27,735,542 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr8 | 27,734,995 | 27,735,542 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
chr8 | 27,734,995 | 27,735,542 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
chr8 | 27,734,995 | 27,735,542 | RiceDiversity 44K SNP assay, 34 trait... | 0 |