QTL Accession ID | AQFF044 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SPKST |
Trait Name | spikelet sterility |
Published Symbol | qpss8.2 |
Trait Synonym(s) |
PSS percent spikelet sterility |
Trait Category | Sterility or fertility |
Chromosome | 8 |
Comments | This QTL was detected under the W4 treatment (categorized as very severe stress condition; received 0.0 mm water per day). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 17,437,513-24,478,817 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | TNCGEB CT9993/IR6226 QTL 2004 | BNL6.32 | 8 | 49.5-69.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFF044 | 8 | 49.5 | 69.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG978 | RFLP | Oryza sativa | qtl_marker |
To | R1394 | RFLP | Oryza sativa | qtl_marker |
To | G2132 | RFLP | Oryza sativa | qtl_marker |
To | G1073 | RFLP | Oryza sativa | qtl_marker |
To | RM80 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RG1 | RFLP | Oryza sativa | qtl_marker |
To | G187 | RFLP | Oryza sativa | qtl_marker |
To | RM256 | SSR | Oryza sativa Indica Group | qtl_marker |
To | C1121 | RFLP | Oryza sativa | qtl_marker |
To | RM210 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000436) | Lanceras-J-C et al., 2004 (IAGP) |
Plant Structure | (PO:0009051) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Lanceras-J-C et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr8 | 17,437,513 | 24,478,817 | ~160K SNPs x 20 accessions (McNally 2... | 2,204 | Search for SNPs |
chr8 | 17,437,513 | 24,478,817 | '1536 chip' - 1311 SNPs x 395 rice ac... | 18 | Search for SNPs |
chr8 | 17,437,513 | 24,478,817 | Huang X, et al, Nat Genetics 2010 Nov... | 14,680 | Search for SNPs |
chr8 | 17,437,513 | 24,478,817 | RiceDiversity 44K SNP assay, 34 trait... | 14,680 | Search for SNPs |
chr8 | 17,437,513 | 24,478,817 | RiceDiversity 44K SNP assay, 34 trait... | 611 | Search for SNPs |