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Oryza sativa QTL "AQFD017" (tiller bud dormancy)
| QTL Accession ID | AQFD017 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | TIBUDDOR |
| Trait Name | tiller bud dormancy |
| Published Symbol | |
| Trait Synonym(s) | |
| Trait Category | Development |
| Chromosome | 3 |
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 11,525,225-14,291,967 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JUT IR36/Genj QTL 2004 | BNL6.32 | 3 | 39.7-55.1 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQFD017 | 3 | 39.7 | 55.1 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | R3156 | RFLP | Oryza sativa | qtl_marker |
| To | R2170 | RFLP | Oryza sativa | qtl_marker |
| To | RM251 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM16 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000661) | Miyamoto-N et al., 2004 (IAGP) |
| Plant Structure | (PO:0005001) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007073) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007049) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Miyamoto-N et al., 2004 (SM) |
Database Cross-References (1)
SNPs (9,187)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 11,525,225 | 14,291,967 | ~160K SNPs x 20 accessions (McNally 2... | 1,215 | Search for SNPs |
| chr3 | 11,525,225 | 14,291,967 | '1536 chip' - 1311 SNPs x 395 rice ac... | 11 | Search for SNPs |
| chr3 | 11,525,225 | 14,291,967 | Huang X, et al, Nat Genetics 2010 Nov... | 3,843 | Search for SNPs |
| chr3 | 11,525,225 | 14,291,967 | RiceDiversity 44K SNP assay, 34 trait... | 3,843 | Search for SNPs |
| chr3 | 11,525,225 | 14,291,967 | RiceDiversity 44K SNP assay, 34 trait... | 275 | Search for SNPs |
