QTL Accession ID | AQFD009 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | TIBUDDOR |
Trait Name | tiller bud dormancy |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Development |
Chromosome | 6 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 6,520,988-8,066,358 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JUT IR36/Genj QTL 2004 | BNL6.32 | 6 | 47.7-53 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFD009 | 6 | 47.7 | 53 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | R2147 | RFLP | Oryza sativa | qtl_marker |
To | R2171 | RFLP | Oryza sativa | qtl_marker |
To | RM217 | SSR | Oryza sativa Indica Group | qtl_marker |
To | R2123 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000661) | Miyamoto-N et al., 2004 (IAGP) |
Plant Structure | (PO:0005001) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007073) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007049) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Miyamoto-N et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 6,520,988 | 8,066,358 | ~160K SNPs x 20 accessions (McNally 2... | 1,042 | Search for SNPs |
chr6 | 6,520,988 | 8,066,358 | '1536 chip' - 1311 SNPs x 395 rice ac... | 9 | Search for SNPs |
chr6 | 6,520,988 | 8,066,358 | Huang X, et al, Nat Genetics 2010 Nov... | 5,690 | Search for SNPs |
chr6 | 6,520,988 | 8,066,358 | RiceDiversity 44K SNP assay, 34 trait... | 5,690 | Search for SNPs |
chr6 | 6,520,988 | 8,066,358 | RiceDiversity 44K SNP assay, 34 trait... | 182 | Search for SNPs |