QTL Accession ID | AQFD007 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
Trait Symbol | TINB | ||||||||||
Trait Name | tiller number | ||||||||||
Published Symbol | |||||||||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||||||||
Chromosome | 8 | ||||||||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 28,170,621-28,173,143 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JUT IR36/Genj QTL 2004 | BNL6.32 | 8 | 98.1-98.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFD007 | 8 | 98.1 | 98.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM264 | SSR | Oryza sativa Indica Group | qtl_marker |
To | R1963 | RFLP | Oryza sativa | qtl_marker |
To | R2662 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000346) | Miyamoto-N et al., 2004 (IAGP) |
Plant Structure | (PO:0005001) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007073) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007049) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Miyamoto-N et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr8 | 28,170,621 | 28,173,143 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr8 | 28,170,621 | 28,173,143 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr8 | 28,170,621 | 28,173,143 | Huang X, et al, Nat Genetics 2010 Nov... | 2 | Search for SNPs |
chr8 | 28,170,621 | 28,173,143 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
chr8 | 28,170,621 | 28,173,143 | RiceDiversity 44K SNP assay, 34 trait... | 0 |