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Oryza sativa QTL "AQFC002" (elongation ability)
| QTL Accession ID | AQFC002 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | ELAB |
| Trait Name | elongation ability |
| Published Symbol | |
| Trait Synonym(s) | |
| Trait Category | Abiotic stress |
| Chromosome | 12 |
| Comments | Length of the lowest elongated internode was measured to evaluate elongation ability and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 23,517,144-26,108,004 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JUT Patnai/Goai F2 QTL 2004 | BNL6.32 | 12 | 92.4-114.3 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQFC002 | 12 | 92.4 | 114.3 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | R1709 | RFLP | Oryza sativa | qtl_marker |
| To | RM235 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | C449 | RFLP | Oryza sativa | qtl_marker |
| To | RM12 | SSR | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000170) | Nemoto-K et al., 2004 (IAGP) |
| Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007198) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Nemoto-K et al., 2004 (SM) |
Database Cross-References (1)
SNPs (13,177)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr12 | 23,517,144 | 26,108,004 | ~160K SNPs x 20 accessions (McNally 2... | 1,483 | Search for SNPs |
| chr12 | 23,517,144 | 26,108,004 | '1536 chip' - 1311 SNPs x 395 rice ac... | 12 | Search for SNPs |
| chr12 | 23,517,144 | 26,108,004 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
| chr12 | 23,517,144 | 26,108,004 | Huang X, et al, Nat Genetics 2010 Nov... | 5,703 | Search for SNPs |
| chr12 | 23,517,144 | 26,108,004 | RiceDiversity 44K SNP assay, 34 trait... | 5,703 | Search for SNPs |
| chr12 | 23,517,144 | 26,108,004 | RiceDiversity 44K SNP assay, 34 trait... | 276 | Search for SNPs |
