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Oryza sativa QTL "AQFB008" (seed dormancy)
| QTL Accession ID | AQFB008 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | SDDOR |
| Trait Name | seed dormancy |
| Published Symbol | qSD-7-2 |
| Trait Synonym(s) |
SDDOR dormancy |
| Trait Category | Vigor |
| Chromosome | 7 |
| Comments | Germination of seeds at 1 days after-repening was measured to evaluate seed dormancy and used for QTL analysis. The dormancy allele was from the weedy strain SS18-2. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 25,472,688-25,652,668 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | NDSU EM93/SS18 BC QTL 2004 | BNL6.32 | 7 | 94.8-120.5 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQFB008 | 7 | 94.8 | 120.5 |
Associated Markers (5)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM346 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM234 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM18 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM320 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM118 | SSR | Oryza sativa Japonica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (9)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000253) | Gu-X-Y et al., 2004 (IAGP) |
| Plant Structure | (PO:0009010) | Gu-X-Y et al., 2004 (SM) |
| Plant Growth and Development Stage | (PO:0007132) | Gu-X-Y et al., 2004 (SM) |
| (PO:0007057) | Gu-X-Y et al., 2004 (SM) | |
| (PO:0007038) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007045) | Gu-X-Y et al., 2004 (SM) |
| (GRO:0007043) | Gu-X-Y et al., 2004 (SM) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Gu-X-Y et al., 2004 (SM) |
Database Cross-References (1)
SNPs (892)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr7 | 25,472,688 | 25,652,668 | ~160K SNPs x 20 accessions (McNally 2... | 53 | Search for SNPs |
| chr7 | 25,472,688 | 25,652,668 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr7 | 25,472,688 | 25,652,668 | Huang X, et al, Nat Genetics 2010 Nov... | 410 | Search for SNPs |
| chr7 | 25,472,688 | 25,652,668 | RiceDiversity 44K SNP assay, 34 trait... | 410 | Search for SNPs |
| chr7 | 25,472,688 | 25,652,668 | RiceDiversity 44K SNP assay, 34 trait... | 19 | Search for SNPs |
