QTL Accession ID | AQFB004 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SDDOR |
Trait Name | seed dormancy |
Published Symbol | qSD-6 |
Trait Synonym(s) |
SDDOR dormancy |
Trait Category | Vigor |
Chromosome | 6 |
Comments | Germination of seeds at 21 days after-repening was measured to evaluate seed dormancy and used for QTL analysis. The dormancy allele was from the weedy strain SS18-2. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 6,976,491-11,817,351 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | NDSU EM93/SS18 BC QTL 2004 | BNL6.32 | 6 | 49.9-99.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFB004 | 6 | 49.9 | 99.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM314 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM549 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM564 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM541 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM204 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM275 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000253) | Gu-X-Y et al., 2004 (IAGP) |
Plant Structure | (PO:0009010) | Gu-X-Y et al., 2004 (SM) |
Plant Growth and Development Stage | (PO:0007132) | Gu-X-Y et al., 2004 (SM) |
(PO:0007057) | Gu-X-Y et al., 2004 (SM) | |
(PO:0007038) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007045) | Gu-X-Y et al., 2004 (SM) |
(GRO:0007043) | Gu-X-Y et al., 2004 (SM) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Gu-X-Y et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 6,976,491 | 11,817,351 | ~160K SNPs x 20 accessions (McNally 2... | 2,837 | Search for SNPs |
chr6 | 6,976,491 | 11,817,351 | '1536 chip' - 1311 SNPs x 395 rice ac... | 22 | Search for SNPs |
chr6 | 6,976,491 | 11,817,351 | Huang X, et al, Nat Genetics 2010 Nov... | 13,245 | Search for SNPs |
chr6 | 6,976,491 | 11,817,351 | RiceDiversity 44K SNP assay, 34 trait... | 13,245 | Search for SNPs |
chr6 | 6,976,491 | 11,817,351 | RiceDiversity 44K SNP assay, 34 trait... | 494 | Search for SNPs |