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Oryza sativa QTL "AQFA018" (brown rice yield)
| QTL Accession ID | AQFA018 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | BRWRYLD |
| Trait Name | brown rice yield |
| Published Symbol | br12.1 |
| Trait Synonym(s) | BR |
| Trait Category | Yield |
| Chromosome | 12 |
| Comments | The increased effect of this QTL was associated with the 'O. glaberrima' allele. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 3,185,384-5,758,850 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell V20A/glab QTL 2004 | BNL6.32 | 12 | 23.4-37.5 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQFA018 | 12 | 23.4 | 37.5 |
Associated Markers (6)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM19 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RZ257 | RFLP | Oryza sativa | qtl_marker |
| To | RM247 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RZ397 | RFLP | Oryza sativa | qtl_marker |
| To | RZ816 | RFLP | Oryza sativa | qtl_marker |
| To | RG241 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000666) | Li-J et al., 2004 (IAGP) |
| Plant Structure | (PO:0009010) | Li-J et al., 2004 (SM) |
| Plant Growth and Development Stage | (PO:0007038) | Li-J et al., 2004 (SM) |
| (PO:0007130) | Li-J et al., 2004 (SM) | |
| Growth Stage | (GRO:0007045) | Li-J et al., 2004 (SM) |
| (GRO:0007140) | Li-J et al., 2004 (SM) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Li-J et al., 2004 (SM) |
Database Cross-References (1)
SNPs (9,006)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr12 | 3,185,384 | 5,758,850 | ~160K SNPs x 20 accessions (McNally 2... | 1,225 | Search for SNPs |
| chr12 | 3,185,384 | 5,758,850 | '1536 chip' - 1311 SNPs x 395 rice ac... | 10 | Search for SNPs |
| chr12 | 3,185,384 | 5,758,850 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
| chr12 | 3,185,384 | 5,758,850 | Huang X, et al, Nat Genetics 2010 Nov... | 3,770 | Search for SNPs |
| chr12 | 3,185,384 | 5,758,850 | RiceDiversity 44K SNP assay, 34 trait... | 3,770 | Search for SNPs |
| chr12 | 3,185,384 | 5,758,850 | RiceDiversity 44K SNP assay, 34 trait... | 231 | Search for SNPs |
