QTL Accession ID | AQFA003 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | AMYCN | ||||
Trait Name | amylose content | ||||
Published Symbol | ac1.1 | ||||
Trait Synonym(s) |
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Trait Category | Quality | ||||
Chromosome | 1 | ||||
Comments | The increased effect of this QTL was associated with the 'V20A' allele. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 9,701,793-9,707,307 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell V20A/glab QTL 2004 | BNL6.32 | 1 | 145.7-145.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFA003 | 1 | 145.7 | 145.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG532 | RFLP | Oryza sativa | qtl_marker |
To | RZ382 | RFLP | Oryza sativa | qtl_marker |
To | RG400 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000196) | Li-J et al., 2004 (IAGP) |
Plant Structure | (PO:0009010) | Li-J et al., 2004 (SM) |
Plant Growth and Development Stage | (PO:0007038 ) | Li-J et al., 2004 (SM) |
Growth Stage | (GRO:0007045) | Li-J et al., 2004 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Li-J et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 9,701,793 | 9,707,307 | ~160K SNPs x 20 accessions (McNally 2... | 4 | Search for SNPs |
chr1 | 9,701,793 | 9,707,307 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr1 | 9,701,793 | 9,707,307 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
chr1 | 9,701,793 | 9,707,307 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
chr1 | 9,701,793 | 9,707,307 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |