QTL Accession ID | AQF131 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | PNBLBR |
Trait Name | panicle base to lowest branch |
Published Symbol | |
Trait Synonym(s) |
panicle base to first primary branch peduncle length from panicle base to first primary branch |
Trait Category | Anatomy |
Chromosome | 5 |
Comments | Related with indica and japonica subspecies diagnostic trait. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 24,316,513-24,317,105 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JNIG W1944/Peik QTL 2002 | BNL6.32 | 5 | 90.8-116.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQF131 | 5 | 90.8 | 116.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | BCD738 | RFLP | Hordeum vulgare | qtl_marker |
To | G366 | RFLP | Oryza sativa | qtl_marker |
To | C43 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000545) | Cai-W et al., 2002 (IAGP) |
Plant Structure | (PO:0009053) | Cai-W et al., 2002 (SM) |
(PO:0009049) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007041) | Cai-W et al., 2002 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007044) | Cai-W et al., 2002 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Cai-W et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 24,316,513 | 24,317,105 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr5 | 24,316,513 | 24,317,105 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr5 | 24,316,513 | 24,317,105 | Huang X, et al, Nat Genetics 2010 Nov... | 2 | Search for SNPs |
chr5 | 24,316,513 | 24,317,105 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
chr5 | 24,316,513 | 24,317,105 | RiceDiversity 44K SNP assay, 34 trait... | 0 |