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Oryza sativa QTL "AQF130" (panicle base to lowest branch)
| QTL Accession ID | AQF130 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | PNBLBR |
| Trait Name | panicle base to lowest branch |
| Published Symbol | |
| Trait Synonym(s) |
panicle base to first primary branch peduncle length from panicle base to first primary branch |
| Trait Category | Anatomy |
| Chromosome | 1 |
| Comments | Related with indica and japonica subspecies diagnostic trait. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 31,046,003-31,047,458 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JNIG W1944/Peik QTL 2002 | BNL6.32 | 1 | 247.4-267.7 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQF130 | 1 | 247.4 | 267.7 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | G393 | RFLP | Oryza sativa | qtl_marker |
| To | CDO118 | RFLP | Avena sativa | qtl_marker |
| To | CDO345 | RFLP | Avena sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000545) | Cai-W et al., 2002 (IAGP) |
| Plant Structure | (PO:0009053) | Cai-W et al., 2002 (SM) |
| (PO:0009049) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007041) | Cai-W et al., 2002 (SM) |
| (PO:0007130) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007044) | Cai-W et al., 2002 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Cai-W et al., 2002 (SM) |
Database Cross-References (1)
SNPs (10)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 31,046,003 | 31,047,458 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr1 | 31,046,003 | 31,047,458 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr1 | 31,046,003 | 31,047,458 | Huang X, et al, Nat Genetics 2010 Nov... | 5 | Search for SNPs |
| chr1 | 31,046,003 | 31,047,458 | RiceDiversity 44K SNP assay, 34 trait... | 5 | Search for SNPs |
| chr1 | 31,046,003 | 31,047,458 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
