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Oryza sativa QTL "AQF084" (panicle tiller ratio)
| QTL Accession ID | AQF084 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | PNTIRO | ||||
| Trait Name | panicle tiller ratio | ||||
| Published Symbol | |||||
| Trait Synonym(s) |
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| Trait Category | Yield | ||||
| Chromosome | 1 | ||||
| Comments | Related with life-history trait. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 3,445,940-7,862,478 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JNIG W1944/Peik QTL 2002 | BNL6.32 | 1 | 0-28.2 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQF084 | 1 | 0 | 28.2 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | R1613 | RFLP | Oryza sativa | qtl_marker |
| To | CDO328 | RFLP | Avena sativa | qtl_marker |
| To | G165 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (10)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000453) | Cai-W et al., 2002 (IAGP) |
| Plant Structure | (PO:0009049) | Cai-W et al., 2002 (SM) |
| (PO:0005001) | Cai-W et al., 2002 (SM) | |
| Plant Growth and Development Stage | (PO:0007130) | Cai-W et al., 2002 (SM) |
| (PO:0007073 ) | Cai-W et al., 2002 (SM) | |
| Growth Stage | (GRO:0007140) | Cai-W et al., 2002 (SM) |
| (GRO:0007049) | Cai-W et al., 2002 (SM) | |
| (GRO:0007044) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Cai-W et al., 2002 (SM) |
Database Cross-References (1)
SNPs (25,566)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 3,445,940 | 7,862,478 | ~160K SNPs x 20 accessions (McNally 2... | 3,334 | Search for SNPs |
| chr1 | 3,445,940 | 7,862,478 | '1536 chip' - 1311 SNPs x 395 rice ac... | 25 | Search for SNPs |
| chr1 | 3,445,940 | 7,862,478 | Huang X, et al, Nat Genetics 2010 Nov... | 10,558 | Search for SNPs |
| chr1 | 3,445,940 | 7,862,478 | RiceDiversity 44K SNP assay, 34 trait... | 10,558 | Search for SNPs |
| chr1 | 3,445,940 | 7,862,478 | RiceDiversity 44K SNP assay, 34 trait... | 1,091 | Search for SNPs |
