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Oryza sativa QTL "AQF083" (ratooning ability)
| QTL Accession ID | AQF083 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | RAAB |
| Trait Name | ratooning ability |
| Published Symbol | |
| Trait Synonym(s) | |
| Trait Category | Vigor |
| Chromosome | 11 |
| Comments | Related with life-history trait. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 4,078,099-4,079,226 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JNIG W1944/Peik QTL 2002 | BNL6.32 | 11 | 29.1-44.5 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQF083 | 11 | 29.1 | 44.5 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ141 | RFLP | Oryza sativa | qtl_marker |
| To | G24 | RFLP | Oryza sativa | qtl_marker |
| To | G320 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000096) | Cai-W et al., 2002 (IAGP) |
| Plant Structure | (PO:0006343) | Cai-W et al., 2002 (SM) |
| (PO:0005001) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007073) | Cai-W et al., 2002 (SM) |
| Growth Stage | (GRO:0007049) | Cai-W et al., 2002 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Cai-W et al., 2002 (SM) |
Database Cross-References (1)
SNPs (5)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr11 | 4,078,099 | 4,079,226 | ~160K SNPs x 20 accessions (McNally 2... | 3 | Search for SNPs |
| chr11 | 4,078,099 | 4,079,226 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr11 | 4,078,099 | 4,079,226 | Huang X, et al, Nat Genetics 2010 Nov... | 0 | |
| chr11 | 4,078,099 | 4,079,226 | RiceDiversity 44K SNP assay, 34 trait... | 0 | |
| chr11 | 4,078,099 | 4,079,226 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
