QTL Accession ID | AQEY022 | ||||||||||
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Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
Trait Symbol | TSDWT | ||||||||||
Trait Name | 1000-seed weight | ||||||||||
Published Symbol | Kw10-2 | ||||||||||
Trait Synonym(s) |
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Trait Category | Yield | ||||||||||
Chromosome | 10 | ||||||||||
Comments | This locus was found to have significant interaction with another locus, AQEY021. It had significant additive effect at 0.005 level, and significant epstatic effects of additive X additive and additive X dominance at 0.005 level. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 22,243,157-22,867,270 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 10 | 113.5-116.8 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQEY022 | 10 | 113.5 | 116.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM228 | SSR | Oryza sativa Indica Group | qtl_marker |
To | C371 | RFLP | Oryza sativa | qtl_marker |
To | RG561 | RFLP | Oryza sativa | qtl_marker |
To | C405 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000382) | Gao-Y-M et al., 2004 (IAGP) |
Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Gao-Y-M et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr10 | 22,243,157 | 22,867,270 | ~160K SNPs x 20 accessions (McNally 2... | 226 | Search for SNPs |
chr10 | 22,243,157 | 22,867,270 | '1536 chip' - 1311 SNPs x 395 rice ac... | 3 | Search for SNPs |
chr10 | 22,243,157 | 22,867,270 | Huang X, et al, Nat Genetics 2010 Nov... | 2,077 | Search for SNPs |
chr10 | 22,243,157 | 22,867,270 | RiceDiversity 44K SNP assay, 34 trait... | 2,077 | Search for SNPs |
chr10 | 22,243,157 | 22,867,270 | RiceDiversity 44K SNP assay, 34 trait... | 62 | Search for SNPs |