QTL Accession ID | AQEY004 | ||||||||||
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Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
Trait Symbol | TSDWT | ||||||||||
Trait Name | 1000-seed weight | ||||||||||
Published Symbol | Kw2-2 | ||||||||||
Trait Synonym(s) |
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Trait Category | Yield | ||||||||||
Chromosome | 2 | ||||||||||
Comments | This locus was found to have significant interaction with another locus, AQEY003. It had significant additive effect at 0.05 level, and significant epstatic effects of additive X additive and additive X dominance and dominance X additive at 0.05 level. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 18,246,802-19,647,383 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 2a | 89.2-96 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQEY004 | 2 | 89.2 | 96 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C777 | RFLP | Oryza sativa | qtl_marker |
To | RZ386 | RFLP | Oryza sativa | qtl_marker |
To | R1843 | RFLP | Oryza sativa | qtl_marker |
To | RM475 | SSR | Oryza sativa Japonica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000382) | Gao-Y-M et al., 2004 (IAGP) |
Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Gao-Y-M et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 18,246,802 | 19,647,383 | ~160K SNPs x 20 accessions (McNally 2... | 398 | Search for SNPs |
chr2 | 18,246,802 | 19,647,383 | '1536 chip' - 1311 SNPs x 395 rice ac... | 8 | Search for SNPs |
chr2 | 18,246,802 | 19,647,383 | Huang X, et al, Nat Genetics 2010 Nov... | 3,575 | Search for SNPs |
chr2 | 18,246,802 | 19,647,383 | RiceDiversity 44K SNP assay, 34 trait... | 3,575 | Search for SNPs |
chr2 | 18,246,802 | 19,647,383 | RiceDiversity 44K SNP assay, 34 trait... | 136 | Search for SNPs |