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Oryza sativa QTL "AQEX015" (biomass yield)
| QTL Accession ID | AQEX015 | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||
| Trait Symbol | BIOMYLD | ||||||||
| Trait Name | biomass yield | ||||||||
| Published Symbol | qSDW1 | ||||||||
| Trait Synonym(s) |
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| Trait Category | Yield | ||||||||
| Chromosome | 1 | ||||||||
| Comments | This QTL was detected based on phenotypic data of 40-day-old seedlings. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 34,470,620-37,713,775 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 1 | 213.4-219.2 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQEX015 | 1 | 213.4 | 219.2 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C2340 | RFLP | Oryza sativa | qtl_marker |
| To | C86 | RFLP | Oryza sativa | qtl_marker |
| To | C547 | RFLP | Oryza sativa | qtl_marker |
| To | RG236 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000327) | Xu-C-G et al., 2004 (IAGP) |
| Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007140) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Xu-C-G et al., 2004 (SM) |
Database Cross-References (1)
SNPs (11,544)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 34,470,620 | 37,713,775 | ~160K SNPs x 20 accessions (McNally 2... | 2,342 | Search for SNPs |
| chr1 | 34,470,620 | 37,713,775 | '1536 chip' - 1311 SNPs x 395 rice ac... | 9 | Search for SNPs |
| chr1 | 34,470,620 | 37,713,775 | Huang X, et al, Nat Genetics 2010 Nov... | 4,382 | Search for SNPs |
| chr1 | 34,470,620 | 37,713,775 | RiceDiversity 44K SNP assay, 34 trait... | 4,382 | Search for SNPs |
| chr1 | 34,470,620 | 37,713,775 | RiceDiversity 44K SNP assay, 34 trait... | 429 | Search for SNPs |
