QTL Accession ID | AQEP013 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SDLVIG |
Trait Name | seedling vigor |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Vigor |
Chromosome | 3 |
Comments | Mesocotyl length under 25 C temperature condition was measured to evaluate seedling vigor and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 23,088,332-34,626,096 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | UCD Lab/Bla QTL 1998 | BNL6.32 | 3 | 5-89 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQEP013 | 3 | 5 | 89 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ142 | RFLP | Oryza sativa | qtl_marker |
To | RG910 | RFLP | Oryza sativa | qtl_marker |
To | RZ630 | RFLP | Oryza sativa | qtl_marker |
To | RZ448 | RFLP | Oryza sativa | qtl_marker |
To | RZ403 | RFLP | Oryza sativa | qtl_marker |
To | CDO457 | RFLP | Avena sativa | qtl_marker |
To | RZ452 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000280) | Redona-E-D et al., 1996 (IAGP) |
Plant Structure | (PO:0009003) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007131) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007043) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Redona-E-D et al., 1996 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 23,088,332 | 34,626,096 | ~160K SNPs x 20 accessions (McNally 2... | 6,319 | Search for SNPs |
chr3 | 23,088,332 | 34,626,096 | '1536 chip' - 1311 SNPs x 395 rice ac... | 33 | Search for SNPs |
chr3 | 23,088,332 | 34,626,096 | Huang X, et al, Nat Genetics 2010 Nov... | 27,513 | Search for SNPs |
chr3 | 23,088,332 | 34,626,096 | RiceDiversity 44K SNP assay, 34 trait... | 27,513 | Search for SNPs |
chr3 | 23,088,332 | 34,626,096 | RiceDiversity 44K SNP assay, 34 trait... | 1,594 | Search for SNPs |