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Oryza sativa QTL "AQEM002" (salt sensitivity)
| QTL Accession ID | AQEM002 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | SALTSN |
| Trait Name | salt sensitivity |
| Published Symbol | qSDS-6 |
| Trait Synonym(s) |
saline sensitivity salt tolerance |
| Trait Category | Abiotic stress |
| Chromosome | 6 |
| Comments | Survival days of seedling was recorded to evaluate salt tolerance in rice and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 21,605,889-24,919,236 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNSIPPE Non/Kos QTL 2004 | BNL6.32 | 6 | 93.6-115.6 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQEM002 | 6 | 93.6 | 115.6 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C214 | RFLP | Oryza sativa | qtl_marker |
| To | R2549 | RFLP | Oryza sativa | qtl_marker |
| To | R2123 | RFLP | Oryza sativa | qtl_marker |
| To | R276 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000429) | Lin-H-X et al., 2004 (IAGP) |
| Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007185) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Lin-H-X et al., 2004 (SM) |
Database Cross-References (1)
SNPs (14,410)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr6 | 21,605,889 | 24,919,236 | ~160K SNPs x 20 accessions (McNally 2... | 1,949 | Search for SNPs |
| chr6 | 21,605,889 | 24,919,236 | '1536 chip' - 1311 SNPs x 395 rice ac... | 12 | Search for SNPs |
| chr6 | 21,605,889 | 24,919,236 | Huang X, et al, Nat Genetics 2010 Nov... | 6,037 | Search for SNPs |
| chr6 | 21,605,889 | 24,919,236 | RiceDiversity 44K SNP assay, 34 trait... | 6,037 | Search for SNPs |
| chr6 | 21,605,889 | 24,919,236 | RiceDiversity 44K SNP assay, 34 trait... | 375 | Search for SNPs |
