QTL Accession ID | AQEL023 | ||||||||
---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||
Trait Symbol | RTNB | ||||||||
Trait Name | root number | ||||||||
Published Symbol | |||||||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||||||
Chromosome | 6 | ||||||||
Comments | Lateral root number on the seminal root at a soil depth of from 3 to 6 cm under flooding condition was measured to evaluate root number in rice and used for QTL analysis of drought tolerance. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 19,337,571-26,411,439 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNZU IR1552/Azu RI QTL 2003 | BNL6.32 | 6 | 159.1-171.5 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQEL023 | 6 | 159.1 | 171.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG648 | RFLP | Oryza sativa | qtl_marker |
To | RZ140 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000084) | Zheng-B-S et al., 2003 (IAGP) |
Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Zheng-B-S et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 19,337,571 | 26,411,439 | ~160K SNPs x 20 accessions (McNally 2... | 4,368 | Search for SNPs |
chr6 | 19,337,571 | 26,411,439 | '1536 chip' - 1311 SNPs x 395 rice ac... | 28 | Search for SNPs |
chr6 | 19,337,571 | 26,411,439 | Huang X, et al, Nat Genetics 2010 Nov... | 13,469 | Search for SNPs |
chr6 | 19,337,571 | 26,411,439 | RiceDiversity 44K SNP assay, 34 trait... | 13,469 | Search for SNPs |
chr6 | 19,337,571 | 26,411,439 | RiceDiversity 44K SNP assay, 34 trait... | 791 | Search for SNPs |