QTL Accession ID | AQEK007 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | FESN |
Trait Name | iron sensitivity |
Published Symbol | |
Trait Synonym(s) | iron toxicity |
Trait Category | Abiotic stress |
Chromosome | 12 |
Comments | Plant height was measured to evaluate resistance to ferrous iron toxicity in rice and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 532,909-1,005,506 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JKU Aso/IR24 QTL 1996 | BNL6.32 | 12 | 68.2-84.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQEK007 | 12 | 68.2 | 84.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C3029S | RFLP | Oryza sativa | qtl_marker |
To | G189 | RFLP | Oryza sativa | qtl_marker |
To | C718 | RFLP | Oryza sativa | qtl_marker |
To | R1957 | RFLP | Oryza sativa | qtl_marker |
To | C104 | RFLP | Oryza sativa | qtl_marker |
To | G193 | RFLP | Oryza sativa | qtl_marker |
To | G24 | RFLP | Oryza sativa | qtl_marker |
To | R367 | RFLP | Oryza sativa | qtl_marker |
To | G124 | RFLP | Oryza sativa | qtl_marker |
To | C562 | RFLP | Oryza sativa | qtl_marker |
To | XNpb344 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000224) | Wan-J-L et al., 2003 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007242) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Wan-J-L et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr12 | 532,909 | 1,005,506 | ~160K SNPs x 20 accessions (McNally 2... | 214 | Search for SNPs |
chr12 | 532,909 | 1,005,506 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
chr12 | 532,909 | 1,005,506 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
chr12 | 532,909 | 1,005,506 | Huang X, et al, Nat Genetics 2010 Nov... | 1,725 | Search for SNPs |
chr12 | 532,909 | 1,005,506 | RiceDiversity 44K SNP assay, 34 trait... | 1,725 | Search for SNPs |
chr12 | 532,909 | 1,005,506 | RiceDiversity 44K SNP assay, 34 trait... | 28 | Search for SNPs |