QTL Accession ID | AQEK006 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | FESN |
Trait Name | iron sensitivity |
Published Symbol | |
Trait Synonym(s) | iron toxicity |
Trait Category | Abiotic stress |
Chromosome | 6 |
Comments | Plant height was measured to evaluate resistance to ferrous iron toxicity in rice and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 26,161,226-30,823,968 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JKU Aso/IR24 QTL 1996 | BNL6.32 | 6 | 73.5-92.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQEK006 | 6 | 73.5 | 92.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | XNpb386 | RFLP | Oryza sativa | qtl_marker |
To | G12 | RFLP | Oryza sativa | qtl_marker |
To | C259 | RFLP | Oryza sativa | qtl_marker |
To | XNpb135 | RFLP | Oryza sativa | qtl_marker |
To | C962 | RFLP | Oryza sativa | qtl_marker |
To | G342 | RFLP | Oryza sativa | qtl_marker |
To | XNpb170 | RFLP | Oryza sativa | qtl_marker |
To | C1677 | RFLP | Oryza sativa | qtl_marker |
To | G1314 | RFLP | Oryza sativa | qtl_marker |
To | C607 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000224) | Wan-J-L et al., 2003 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007242) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Wan-J-L et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 26,161,226 | 30,823,968 | ~160K SNPs x 20 accessions (McNally 2... | 2,746 | Search for SNPs |
chr6 | 26,161,226 | 30,823,968 | '1536 chip' - 1311 SNPs x 395 rice ac... | 19 | Search for SNPs |
chr6 | 26,161,226 | 30,823,968 | Huang X, et al, Nat Genetics 2010 Nov... | 10,495 | Search for SNPs |
chr6 | 26,161,226 | 30,823,968 | RiceDiversity 44K SNP assay, 34 trait... | 10,495 | Search for SNPs |
chr6 | 26,161,226 | 30,823,968 | RiceDiversity 44K SNP assay, 34 trait... | 550 | Search for SNPs |