QTL Accession ID | AQEK001 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | FESN |
Trait Name | iron sensitivity |
Published Symbol | |
Trait Synonym(s) | iron toxicity |
Trait Category | Abiotic stress |
Chromosome | 3 |
Comments | Leaf bronzing index (LBI = bronzing leaf number / total leaf number) was calcuated to evaluate resistance to ferrous iron toxicity in rice and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 718,777-1,447,579 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JKU Aso/IR24 QTL 1996 | BNL6.32 | 3 | 148.4-155.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQEK001 | 3 | 148.4 | 155.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | XNpb279 | RFLP | Oryza sativa | qtl_marker |
To | C721 | RFLP | Oryza sativa | qtl_marker |
To | R1468 | RFLP | Oryza sativa | qtl_marker |
To | XNpb173 | RFLP | Oryza sativa | qtl_marker |
To | C515 | RFLP | Oryza sativa | qtl_marker |
To | R518 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000224) | Wan-J-L et al., 2003 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007242) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Wan-J-L et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 718,777 | 1,447,579 | ~160K SNPs x 20 accessions (McNally 2... | 429 | Search for SNPs |
chr3 | 718,777 | 1,447,579 | '1536 chip' - 1311 SNPs x 395 rice ac... | 5 | Search for SNPs |
chr3 | 718,777 | 1,447,579 | Huang X, et al, Nat Genetics 2010 Nov... | 472 | Search for SNPs |
chr3 | 718,777 | 1,447,579 | RiceDiversity 44K SNP assay, 34 trait... | 472 | Search for SNPs |
chr3 | 718,777 | 1,447,579 | RiceDiversity 44K SNP assay, 34 trait... | 110 | Search for SNPs |