QTL Accession ID | AQEE025 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | CLGRPCENT | ||||
Trait Name | colored grain percentage | ||||
Published Symbol | |||||
Trait Synonym(s) |
|
||||
Trait Category | Quality | ||||
Chromosome | 1 | ||||
Comments | Percentage of red rice grains (RG) was measured to evaluate colored grain percentage and used for QTL analysis. This locus has significant interaction with another locus, AQEE024. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 40,166,840-40,167,060 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 1 | 212.8-212.8 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQEE025 | 1 | 212.8 | 212.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM104 | SSR | Oryza sativa | qtl_marker |
To | RM431 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RG331 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000617) | Septiningsih-E-M et al., 2003 (IAGP) |
Plant Structure | (PO:0009001) | Septiningsih-E-M et al., 2003 (SM) |
(PO:0009010) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007038 ) | Septiningsih-E-M et al., 2003 (SM) |
Growth Stage | (GRO:0007045) | Septiningsih-E-M et al., 2003 (SM) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Septiningsih-E-M et al., 2003 (SM) |