QTL Accession ID | AQEE021 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | CRUSHGRPCENT |
Trait Name | crushed grain percentage |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Quality |
Chromosome | 3 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 4,947,911-12,407,510 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 3 | 62.5-66.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQEE021 | 3 | 62.5 | 66.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM7 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM251 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM545 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM282 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000618) | Septiningsih-E-M et al., 2003 (IAGP) |
Plant Structure | (PO:0009001) | Septiningsih-E-M et al., 2003 (SM) |
(PO:0009010) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007038 ) | Septiningsih-E-M et al., 2003 (SM) |
Growth Stage | (GRO:0007045) | Septiningsih-E-M et al., 2003 (SM) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Septiningsih-E-M et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 4,947,911 | 12,407,510 | ~160K SNPs x 20 accessions (McNally 2... | 3,363 | Search for SNPs |
chr3 | 4,947,911 | 12,407,510 | '1536 chip' - 1311 SNPs x 395 rice ac... | 27 | Search for SNPs |
chr3 | 4,947,911 | 12,407,510 | Huang X, et al, Nat Genetics 2010 Nov... | 13,236 | Search for SNPs |
chr3 | 4,947,911 | 12,407,510 | RiceDiversity 44K SNP assay, 34 trait... | 13,236 | Search for SNPs |
chr3 | 4,947,911 | 12,407,510 | RiceDiversity 44K SNP assay, 34 trait... | 833 | Search for SNPs |