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Oryza sativa QTL "AQEE020" (crushed grain percentage)
| QTL Accession ID | AQEE020 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | CRUSHGRPCENT |
| Trait Name | crushed grain percentage |
| Published Symbol | |
| Trait Synonym(s) | |
| Trait Category | Quality |
| Chromosome | 2 |
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 25,865,334-32,774,553 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 2 | 154.4-182.9 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQEE020 | 2 | 154.4 | 182.9 |
Associated Markers (7)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM263 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM221 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM240 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM6 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM250 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RG157 | RFLP | Oryza sativa | qtl_marker |
| To | RM208 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000618) | Septiningsih-E-M et al., 2003 (IAGP) |
| Plant Structure | (PO:0009001) | Septiningsih-E-M et al., 2003 (SM) |
| (PO:0009010) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007038 ) | Septiningsih-E-M et al., 2003 (SM) |
| Growth Stage | (GRO:0007045) | Septiningsih-E-M et al., 2003 (SM) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Septiningsih-E-M et al., 2003 (SM) |
Database Cross-References (1)
SNPs (30,514)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr2 | 25,865,334 | 32,774,553 | ~160K SNPs x 20 accessions (McNally 2... | 3,215 | Search for SNPs |
| chr2 | 25,865,334 | 32,774,553 | '1536 chip' - 1311 SNPs x 395 rice ac... | 19 | Search for SNPs |
| chr2 | 25,865,334 | 32,774,553 | Huang X, et al, Nat Genetics 2010 Nov... | 13,261 | Search for SNPs |
| chr2 | 25,865,334 | 32,774,553 | RiceDiversity 44K SNP assay, 34 trait... | 13,261 | Search for SNPs |
| chr2 | 25,865,334 | 32,774,553 | RiceDiversity 44K SNP assay, 34 trait... | 758 | Search for SNPs |
