QTL Accession ID | AQEE016 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | CRKGRPCENT |
Trait Name | cracked grain percentage |
Published Symbol | |
Trait Synonym(s) |
CG percentage of occurrence of cracked grain |
Trait Category | Quality |
Chromosome | 1 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 5,094,276-12,280,327 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 1 | 55.7-99.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQEE016 | 1 | 55.7 | 99.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG140 | RFLP | Oryza sativa | qtl_marker |
To | RZ382 | RFLP | Oryza sativa | qtl_marker |
To | RM23 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RG811 | RFLP | Oryza sativa | qtl_marker |
To | RM493 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM1 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM626 | SSR | Oryza sativa | qtl_marker |
To | RZ776 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000381) | Septiningsih-E-M et al., 2003 (IAGP) |
Plant Structure | (PO:0009001) | Septiningsih-E-M et al., 2003 (SM) |
(PO:0009010) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007038 ) | Septiningsih-E-M et al., 2003 (SM) |
Growth Stage | (GRO:0007045) | Septiningsih-E-M et al., 2003 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Septiningsih-E-M et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 5,094,276 | 12,280,327 | ~160K SNPs x 20 accessions (McNally 2... | 4,216 | Search for SNPs |
chr1 | 5,094,276 | 12,280,327 | '1536 chip' - 1311 SNPs x 395 rice ac... | 25 | Search for SNPs |
chr1 | 5,094,276 | 12,280,327 | Huang X, et al, Nat Genetics 2010 Nov... | 14,949 | Search for SNPs |
chr1 | 5,094,276 | 12,280,327 | RiceDiversity 44K SNP assay, 34 trait... | 14,949 | Search for SNPs |
chr1 | 5,094,276 | 12,280,327 | RiceDiversity 44K SNP assay, 34 trait... | 1,253 | Search for SNPs |