QTL Accession ID | AQEE014 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | HEADR | ||||
Trait Name | head rice | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Quality | ||||
Chromosome | 2 | ||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 19,865,083-27,610,063 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 2 | 126.9-168.3 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQEE014 | 2 | 126.9 | 168.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG157 | RFLP | Oryza sativa | qtl_marker |
To | RM263 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM221 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM27 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM6 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM240 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000222) | Septiningsih-E-M et al., 2003 (IAGP) |
Plant Structure | (PO:0009010) | Septiningsih-E-M et al., 2003 (SM) |
Plant Growth and Development Stage | (PO:0007038 ) | Septiningsih-E-M et al., 2003 (SM) |
Growth Stage | (GRO:0007045) | Septiningsih-E-M et al., 2003 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Septiningsih-E-M et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 19,865,083 | 27,610,063 | ~160K SNPs x 20 accessions (McNally 2... | 4,291 | Search for SNPs |
chr2 | 19,865,083 | 27,610,063 | '1536 chip' - 1311 SNPs x 395 rice ac... | 34 | Search for SNPs |
chr2 | 19,865,083 | 27,610,063 | Huang X, et al, Nat Genetics 2010 Nov... | 22,648 | Search for SNPs |
chr2 | 19,865,083 | 27,610,063 | RiceDiversity 44K SNP assay, 34 trait... | 22,648 | Search for SNPs |
chr2 | 19,865,083 | 27,610,063 | RiceDiversity 44K SNP assay, 34 trait... | 994 | Search for SNPs |