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Oryza sativa QTL "AQEE007" (colored grain percentage)
| QTL Accession ID | AQEE007 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | CLGRPCENT | ||||
| Trait Name | colored grain percentage | ||||
| Published Symbol | |||||
| Trait Synonym(s) |
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| Trait Category | Quality | ||||
| Chromosome | 7 | ||||
| Comments | Percentage of damaged-yellow rice grains (DYG) was measured to evaluate colored grain percentage and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 1,160,982-17,462,588 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 7 | 22.1-81.8 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQEE007 | 7 | 22.1 | 81.8 |
Associated Markers (6)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG417 | RFLP | Oryza sativa | qtl_marker |
| To | RM125 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RG477 | RFLP | Oryza sativa | qtl_marker |
| To | RM445 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RG128 | RFLP | Oryza sativa | qtl_marker |
| To | RM336 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000617) | Septiningsih-E-M et al., 2003 (IAGP) |
| Plant Structure | (PO:0009001) | Septiningsih-E-M et al., 2003 (SM) |
| (PO:0009010) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007038 ) | Septiningsih-E-M et al., 2003 (SM) |
| Growth Stage | (GRO:0007045) | Septiningsih-E-M et al., 2003 (SM) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Septiningsih-E-M et al., 2003 (SM) |
Database Cross-References (1)
SNPs (83,135)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr7 | 1,160,982 | 17,462,588 | ~160K SNPs x 20 accessions (McNally 2... | 2,501 | Search for SNPs |
| chr7 | 1,160,982 | 17,462,588 | '1536 chip' - 1311 SNPs x 395 rice ac... | 28 | Search for SNPs |
| chr7 | 1,160,982 | 17,462,588 | Huang X, et al, Nat Genetics 2010 Nov... | 39,875 | Search for SNPs |
| chr7 | 1,160,982 | 17,462,588 | RiceDiversity 44K SNP assay, 34 trait... | 39,875 | Search for SNPs |
| chr7 | 1,160,982 | 17,462,588 | RiceDiversity 44K SNP assay, 34 trait... | 856 | Search for SNPs |
