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Oryza sativa QTL "AQEE004" (groat percentage)
| QTL Accession ID | AQEE004 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | GROATPCENT | ||||
| Trait Name | groat percentage | ||||
| Published Symbol | |||||
| Trait Synonym(s) |
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| Trait Category | Quality | ||||
| Chromosome | 10 | ||||
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 1,818,800-9,747,605 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 10 | 0-54.9 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQEE004 | 10 | 0 | 54.9 |
Associated Markers (5)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM474 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM311 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM239 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM630 | SSR | Oryza sativa | qtl_marker |
| To | RM271 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (9)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000613) | Septiningsih-E-M et al., 2003 (IAGP) |
| Plant Structure | (PO:0009025) | Septiningsih-E-M et al., 2003 (SM) |
| (PO:0009010) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007017) | Septiningsih-E-M et al., 2003 (SM) |
| (PO:0007038) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007140) | Septiningsih-E-M et al., 2003 (SM) |
| (GRO:0007045) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Septiningsih-E-M et al., 2003 (SM) |
Database Cross-References (1)
SNPs (37,695)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr10 | 1,818,800 | 9,747,605 | ~160K SNPs x 20 accessions (McNally 2... | 2,264 | Search for SNPs |
| chr10 | 1,818,800 | 9,747,605 | '1536 chip' - 1311 SNPs x 395 rice ac... | 30 | Search for SNPs |
| chr10 | 1,818,800 | 9,747,605 | Huang X, et al, Nat Genetics 2010 Nov... | 17,433 | Search for SNPs |
| chr10 | 1,818,800 | 9,747,605 | RiceDiversity 44K SNP assay, 34 trait... | 17,433 | Search for SNPs |
| chr10 | 1,818,800 | 9,747,605 | RiceDiversity 44K SNP assay, 34 trait... | 535 | Search for SNPs |
