QTL Accession ID | AQEE002 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | SDDN | ||||
Trait Name | seed density | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Quality | ||||
Chromosome | 4 | ||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 18,824,746-18,824,943 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 4 | 38.7-67 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQEE002 | 4 | 38.7 | 67 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM628 | SSR | Oryza sativa | qtl_marker |
To | RM471 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM627 | SSR | Oryza sativa | qtl_marker |
To | RG788 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000612) | Septiningsih-E-M et al., 2003 (IAGP) |
Plant Structure | (PO:0009010) | Septiningsih-E-M et al., 2003 (SM) |
Plant Growth and Development Stage | (PO:0007038 ) | Septiningsih-E-M et al., 2003 (SM) |
Growth Stage | (GRO:0007045) | Septiningsih-E-M et al., 2003 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Septiningsih-E-M et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 18,824,746 | 18,824,943 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
chr4 | 18,824,746 | 18,824,943 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr4 | 18,824,746 | 18,824,943 | Huang X, et al, Nat Genetics 2010 Nov... | 0 | |
chr4 | 18,824,746 | 18,824,943 | RiceDiversity 44K SNP assay, 34 trait... | 0 | |
chr4 | 18,824,746 | 18,824,943 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |